Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EHMT2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

sex
male
cell line
HepG2
lab
Bradley Bernstein, Broad
passage number
4
sample_type
immortalized cell line
health state
hepatocellular carcinoma
age
15 year
donor ID
ENCDO000AAC
dev_stage
child

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/20ebf60b-4009-4a57-a540-8fd93407eccc/@@download/attachment/Epigenomics_CR_ChIP_Protocol_v1.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
23141159
Reads aligned (%)
95.5
Duplicates removed (%)
5.7
Number of peaks
9338 (qval < 1E-05)

hg19

Number of total reads
23141159
Reads aligned (%)
94.8
Duplicates removed (%)
5.8
Number of peaks
9295 (qval < 1E-05)

Base call quality data from DBCLS SRA